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Biochemistry (Moscow). Papers in Press. Published on February 11, 2019 as Manuscript BM18-301.

The σ24 Subunit of Escherichia coli RNA Polymerase Can Induce Transcriptional Pausing in vitro

A. B. Shikalov1, D. M. Esyunina1, D. V. Pupov1, A. V. Kulbachinskiy1, and I. V. Petushkov1,a*

1Institute of Molecular Genetics, Russian Academy of Sciences, 123182 Moscow, Russia

*To whom correspondence should be addressed.

Received November 2, 2018; Revised December 5, 2018; Accepted December 5, 2018
The bacterium Escherichia coli has seven σsubunits that bind core RNA polymerase and are necessary for promoter recognition. It was previously shown that the σ70 and σ38 subunits can also interact with the transcription elongation complex (TEC) and stimulate pausing by recognizing DNA sequences similar to the -10 element of promoters. In this study, we analyzed the ability of the σ32, σ28, and σ24subunits to induce pauses inreconstitutedTECs containing corresponding -10 consensus elements. It was found that the σ24 subunit can induce a transcriptional pause depending on the presence of the -10 element. Pause formation is suppressed by the Gre factors, suggesting that the paused complex adopts a backtracked conformation. Some natural promoters contain potential signals of σ24-dependent pauses in the initially transcribed regions, suggesting that such pauses may have regulatory functions in transcription.
KEY WORDS: transcriptional pausing, RNA polymerase, alternative σ factors, Gre proteins