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Processing Character of the Action of Wheat Endonucleases WEN1 and WEN2. Kinetic Parameters

L. I. Fedoreyeva1,2 and B. F. Vanyushin1,2*

1All Russia Research Institute of Agricultural Biotechnology, Russian Academy of Agricultural Sciences, ul. Timiryazevskaya 42, 127550 Moscow, Russia

2Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, 119991 Moscow, Russia; E-mail: vanyush@belozersky.msu.ru

* To whom correspondence should be addressed.

Received October 27, 2011; Revision received November 24, 2011
The wheat seedling endonucleases WEN1 and WEN2 dependent on Mg2+, Ca2+, and S-adenosyl-L-methionine (SAM) and sensitive to the substrate DNA methylation status have an expressed processing action. The enzymes hydrolyze DNA at a few subsequent stages: first, they split λ phage DNA specifically at CNG-sites (WEN1) with liberation of large fragments; second, they hydrolyze these fragments to 120-140 bp oligonucleotides that finally are hydrolyzed to very short fragments and mononucleotides. Initial stages of DNA hydrolysis may proceed in the absence of Mg2+, but subsequent hydrolysis stages are very strongly stimulated by Mg2+. It cannot be ruled out that modulation of enzymatic activity with Mg2+ and probably with DNA fragments formed is associated with reorganization of the structure of eukaryotic (wheat) endonucleases with respective changes in their catalytic properties and site specificity of action. Michaelis constant value for WEN1 endonuclease on hydrolysis of methylated λ phage DNA containing Cm5CWGG and Gm6ATC sites is four-fold lower compared with that observed on hydrolysis of unmethylated λ phage DNA. This may indicate that affinity of WEN1 enzyme to methylated DNA is higher than that to unmethylated DNA. In the presence of SAM, the Michaelis constant for WEN2 on the DNA hydrolysis stage characterized by formation of 120-140 bp fragments is decreased, but for WEN1 it is increased by 1.5-2.0-fold. This means that SAM inhibits WEN1 but stimulates WEN2. Thus, wheat endonucleases WEN1 and WEN2 differ significantly in affinities to substrate DNAs with different methylation status, in velocities of DNA hydrolysis, and time of production of DNA fragments of similar length. It seems that the investigated plant endonucleases can hydrolyze DNA in the nucleus as well to both large and very short fragments including mononucleotides, that is, in particular, essential for utilization of cell nucleic acid material during apoptosis.
KEY WORDS: apoptosis, endonuclease, plant, wheat, kinetics, DNA methylation, processing action, SAM

DOI: 10.1134/S0006297912050082