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Interaction of HydSL Hydrogenase from the Purple Sulfur Bacterium Thiocapsa roseopersicina BBS with Methyl Viologen and Positively Charged Polypeptides

A. V. Abdullatypov*, N. A. Zorin, and A. A. Tsygankov

Institute of Basic Biological Problems, Russian Academy of Sciences, Institutskaya ul. 2, 142290 Pushchino, Moscow Region, Russia; E-mail: azatik888@yandex.ru

* To whom correspondence should be addressed.

Received April 2, 2014; Revision received April 18, 2014
The effect of polypeptides having different charge on the activity of Thiocapsa roseopersicina HydSL hydrogenase was studied. Strong inhibition was shown for poly-L-lysine bearing positive charge. The inhibition was reversible and competitive to methyl viologen, an electron acceptor, in the reaction of hydrogen oxidation catalyzed by the hydrogenase. Peptides carrying less positive charge had weaker inhibiting effect, while neutral and negatively charged peptides did not inhibit the hydrogenase. Molecular docking of poly-L-lysine to T. roseopersicina hydrogenase showed strong affinity of this polypeptide to the acceptor-binding site of the enzyme. The calculated binding constant is close to the experimentally measured value (Ki = 2.1 μM).
KEY WORDS: hydrogenase, methyl viologen, polypeptides, competitive inhibition, molecular docking

DOI: 10.1134/S0006297914080082